Brain region models and papers

Community-based Reconstruction and Simulation of a Full-scale Model of Region CA1 of Rat Hippocampus

Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part I: Anatomy

Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part II: Physiology and Experimentation

Assemblies, synapse clustering and network topology interact with plasticity to explain structure-function relationships of the cortical connectome

Rat Non-barrel Somatosensory Cortex Model

Rat Hippocampus CA1 Model

Somatosensory Cortex - Two Interacting Areas Subvolume

Somatosensory Cortex - Single Local Circuit Subvolume

Somatosensory Cortex - Single Local Circuit - Alternate Connectivity with Inhibitory Targeting from MICrONS Data

Computational modeling reveals biological mechanisms underlying the whisker-flick EEG

Spike sorting biases and information loss in a detailed cortical model

BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models

A biophysically-detailed model of inter-areal interactions in cortical sensory processing

Specific inhibition and disinhibition in the higher-order structure of a cortical connectome

Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies

Cortical cell assemblies and their underlying connectivity: An in silico study

Heterogeneous and higher-order cortical connectivity undergirds efficient, robust and reliable neural codes

BBP github - Modeling, simulation and analysis tools

Enhancement of brain atlases with laminar coordinate systems: Flatmaps and barrel column annotations

BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models

A connectome manipulation framework for the systematic and reproducible study of structure function relationships through simulations

Data and Figures for the Hippocampus paper

SSCx toy circuit with 6k neurons in SONATA format

Connectivity matrix of the internal connectivity of a SSCX model